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ExperimentSet4DNESQ6W1U8J
released
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ChIP-seq for Rad21 on 30 hour activated B cells

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
B cell derived cell line
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Rad21 mouse protein

5 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESQ6W1U8J
Multiple Experiments
File
4DNFIMJ8NC7G
peaks (bigbed)
2.81 MB
File
4DNFIHT2MU6B
conservative peaks (bigbed)
2.77 MB
File
4DNFIIBXBWM3
signal fold change (bw)
849.78 MB
Experiment
4DNEXG68HOQ3
Bio Rep 1, Tec Rep 1
ChIP-seq against Rad21 mouse protein on B cell derived cell line
File
4DNFIOY25DK8
read positions (bed)
149.56 MB
Experiment
4DNEXEVYTFAH
Bio Rep 2, Tec Rep 1
ChIP-seq against Rad21 mouse protein on B cell derived cell line
File
4DNFI1FTBKTA
read positions (bed)
154.64 MB

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXG68HOQ3
Bio Rep 1, Tec Rep 1
ChIP-seq against Rad21 mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFIOY25DK8
0.83
0.86
24.58m
Experiment
4DNEXEVYTFAH
Bio Rep 2, Tec Rep 1
ChIP-seq against Rad21 mouse protein on B cell derived cell line
File
Read Positions (bed)
4DNFI1FTBKTA
0.82
0.85
25.46m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESQ6W1U8J
Multiple Experiments
File
Peaks (bigbed)
4DNFIMJ8NC7G
85.27k
1.02
1.01
0.35