ExperimentSetReplicate

ExperimentSet4DNESQ5OSGIR
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single nucleus Hi-C on paternal pronuclei from Wapl control

   June 22nd, 2018 at 5:38pm
Source Publication
A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.
Gassler J, Brandao HB, et al., The EMBO journal 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
animal zygote
Experiment Type(s) 
sn-Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

18 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Biosample
4DNBSWWDEU2M
Bio Replicate 1
Experiment
4DNEXBSKPCR2
Tech Replicate 1
Pair
File
4DNFIBY8M6T3
1.2 GB
125
  Pass
19.81m
File
4DNFITSODZNF
1.22 GB
125
  Pass
19.81m
Biosample
4DNBSWQ8GV9Y
Bio Replicate 2
Experiment
4DNEX89D7LDD
Tech Replicate 1
Pair
File
4DNFIB6IZK77
1.19 GB
125
  Pass
19.29m
File
4DNFI66LYIV6
1.21 GB
125
  Pass
19.29m
Biosample
4DNBSHLCLXDP
Bio Replicate 3
Experiment
4DNEX7SB5DRN
Tech Replicate 1
Pair
File
4DNFI32E597Q
1.2 GB
125
  Pass
19.42m
File
4DNFI5JD8HQJ
1.23 GB
125
  Pass
19.42m
Biosample
4DNBS2TNQABH
Bio Replicate 4
Experiment
4DNEXD561WUN
Tech Replicate 1
Pair
File
4DNFIO9I7HIJ
1.22 GB
125
  Pass
20.44m
File
4DNFIWN6NE7I
1.25 GB
125
  Pass
20.44m
Biosample
4DNBS4WDMSZ9
Bio Replicate 5
Experiment
4DNEXZZZTQ62
Tech Replicate 1
Pair
File
4DNFIOODGJBB
1.16 GB
125
  Pass
19.29m
File
4DNFIUY5NOAN
1.16 GB
125
  Pass
19.29m
Biosample
4DNBSLS5VQPY
Bio Replicate 6
Experiment
4DNEXG8CQI6N
Tech Replicate 1
Pair 1
File
4DNFITFZO4JN
181.26 MB
35-76
  Pass
3.84m
File
4DNFIANVFVYY
189.9 MB
35-76
  Pass
3.84m
Pair 2
File
4DNFIVJRRK6S
181.05 MB
35-76
  Pass
3.82m
File
4DNFIWGN5RAX
189.31 MB
35-76
  Pass
3.82m
Pair 3
File
4DNFIYXVWYKJ
181.63 MB
35-76
  Pass
3.89m
File
4DNFID3E4TTY
190.61 MB
35-76
  Pass
3.89m
Pair 4
File
4DNFIS67LB81
179.88 MB
35-76
  Pass
3.84m
File
4DNFIZI9AQHX
188.52 MB
35-76
  Pass
3.84m
Show 3 More Biosamples with 3 Experiments