ExperimentSetReplicate

ExperimentSet4DNESQ5LDJKC
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 4 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESQ5LDJKC
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI84N9ZDO
46.32m
46.329%
16.754%
36.918%
Experiment
4DNEX3XGBALA
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI243QDNP
46.32m
46.329%
16.754%
36.918%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX3XGBALA
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIV725SXN
105.73m
12.563%
22.968%
20.648%
0.005%
0.144%