ExperimentSetReplicate

ExperimentSet4DNESQ49IXDU
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Chromatin tracing (ORCA) of a 3-Mb region at the chr6 locus in mESC RAD21-AID untreated

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with Rad21-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX6OXVULS
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFIRKSEW93
FOF-CT - DNA-spot/trace core (csv)
8.36 MB
File
4DNFI564TZUI
FOF-CT - spot quality (csv)
2.4 MB
File
4DNFIHCH9G31
FOF-CT - trace data (csv)
36.16 kB
Experiment
4DNEXPQ1PH5B
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFIJIZ3RQH
FOF-CT - DNA-spot/trace core (csv)
9.37 MB
File
4DNFIYZRG3II
FOF-CT - spot quality (csv)
2.68 MB
File
4DNFIWR6KZ2H
FOF-CT - trace data (csv)
41.19 kB
Experiment
4DNEX5IV8FMD
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFIFW72AJF
FOF-CT - DNA-spot/trace core (csv)
3.41 MB
File
4DNFIXIB1TR4
FOF-CT - spot quality (csv)
965.18 kB
File
4DNFI4IHLYY8
FOF-CT - trace data (csv)
19.56 kB
File
4DNFIFJ9C7NW
FOF-CT - cell data (csv)
20.08 kB