ExperimentSetReplicate

ExperimentSet4DNESPWGWJYA
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 1 - 5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Sample 
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESPWGWJYA
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIGWXSYRM
47.75m
34.241%
26.502%
39.257%
Experiment
4DNEXG2Y7RP5
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI868I86J
47.75m
34.241%
26.502%
39.257%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESPWGWJYA
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIFN42UE1
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXG2Y7RP5
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIRJIKCKI
98.38m
15.315%
24.776%
11.368%
0.008%
0.231%