ExperimentSetReplicate

ExperimentSet4DNESPP6Q1WL
released
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in situ Hi-C on olfactory sensory neurons sorted from SARS-Cov2 infected human olfactory epithelium - Patient146

   February 11th, 2021 at 4:40pm
Source Publication
Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia.
Zazhytska M, Kodra A, et al., Cell 2022

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
olfactory receptor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MseI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESPP6Q1WL
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVQ7KT7E
471.89m
45.485%
25.996%
28.519%
Experiment
4DNEXRHUYYHB
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Contact List-replicate (pairs)
4DNFIDB7I86V
471.89m
45.485%
25.996%
28.519%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESPP6Q1WL
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI9LQS315
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXRHUYYHB
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Alignments (bam)
4DNFI4JFMKUX
915.63m
7.056%
10.737%
25.61%
5.059%
0.275%