ExperimentSetReplicate

ExperimentSet4DNESPLDAR9W
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 1.5 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESPLDAR9W
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI9K3UOWT
56.07m
51.555%
14.271%
34.174%
Experiment
4DNEX5JQQYAX
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI8ITZ1J4
56.07m
51.555%
14.271%
34.174%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX5JQQYAX
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIBA1WATY
117.68m
13.184%
24.463%
14.703%
0.004%
0.155%