ExperimentSetReplicate

ExperimentSet4DNESPFY9CUB
released
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in situ Hi-C on microdissected cerebellar vermis lobule IX from C57BL/6 mouse postnatal day 56

   March 26th, 2022 at 10:32pm
Source Publication
Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.
Zhao Z, Parra OP, et al., bioRxiv : the preprint server for biology 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
cerebellum vermis lobule IX
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESPFY9CUB
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI6XAYFYB
346.41m
63.399%
14.688%
21.914%
Experiment
4DNEXPO1IXHV
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule IX with MboI
File
Contact List-replicate (pairs)
4DNFI4ULF8FP
151.45m
62.503%
15.593%
21.904%
Experiment
4DNEXZ1OCVLK
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule IX with MboI
File
Contact List-replicate (pairs)
4DNFIQ3PATGQ
194.96m
64.094%
13.985%
21.921%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESPFY9CUB
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI2AEWGX9
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPO1IXHV
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule IX with MboI
File
Alignments (bam)
4DNFINKY39I2
412.03m
18.257%
22.588%
19.424%
2.973%
0.046%
Experiment
4DNEXZ1OCVLK
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule IX with MboI
File
Alignments (bam)
4DNFIAKUIVU2
449.06m
19.221%
22.397%
11.91%
3.056%
0.046%