ExperimentSetReplicate

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ExperimentSet4DNESPBGJE1U
released
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RNA-seq on wild-type WTC-11 iPSC cells differentiated for 30 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXKQ3RMWC
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIRW4M64B
read positions (bam)
3.18 GB
File
4DNFIGYTH1A3
read counts (bw)
181.44 MB
File
4DNFICJVXLFA
gene expression (tsv)
10.57 MB
File
4DNFIDQNN5V9
isoform expression (tsv)
30.1 MB
Experiment
4DNEXOQLW6A5
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIWVHL2HK
read positions (bam)
2.54 GB
File
4DNFI69NC3LN
read counts (bw)
134.05 MB
File
4DNFIUOCQ2QA
gene expression (tsv)
10.57 MB
File
4DNFIK37J7LT
isoform expression (tsv)
30.09 MB
Experiment
4DNEX6M2YU9U
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI2DJ9456
read positions (bam)
3.45 GB
File
4DNFIC1VD2IA
read counts (bw)
187.51 MB
File
4DNFIDSACAV1
gene expression (tsv)
10.56 MB
File
4DNFIQRJ3O7Z
isoform expression (tsv)
30.09 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXKQ3RMWC
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIRW4M64B
53.58m
48.09m
Experiment
4DNEXOQLW6A5
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIWVHL2HK
41.77m
37.09m
Experiment
4DNEX6M2YU9U
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI2DJ9456
53.21m
46.95m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXKQ3RMWC
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFICJVXLFA
15.76m
40
Experiment
4DNEXOQLW6A5
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIUOCQ2QA
12.77m
34
Experiment
4DNEX6M2YU9U
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIDSACAV1
12.35m
49