ExperimentSetReplicate

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ExperimentSet4DNESP5FREHX
released
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MRE11 ChIPseq on HEK293 cells - time 3h after Cas9-AluTA mgRNA delivery

   February 14th, 2022 at 3:03am
Source Publication
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
Zou RS, Marin-Gonzalez A, et al., Nature cell biology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HEK293 (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Transient Transfection
Assay Details 
Target: MRE11 protein

4 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESP5FREHX
Multiple Experiments
File
4DNFI6COW9AD
peaks (bigbed)
25.01 kB
File
4DNFI7KM6VI3
conservative peaks (bigbed)
25.01 kB
File
4DNFIG7HNNBI
signal fold change (bw)
124.62 MB
Experiment
4DNEXE45LY6O
Bio Rep 1, Tec Rep 1
ChIP-seq against MRE11 protein on HEK293 (Tier 2)
File
4DNFIQP32V1I
read positions (bed)
68.95 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXE45LY6O
Bio Rep 1, Tec Rep 1
ChIP-seq against MRE11 protein on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIQP32V1I
0.17
0.23
4.15m