ExperimentSetReplicate

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ExperimentSet4DNESOO55WGR
released
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CTCF ChIP-seq on untreated and unmodified WTC-11 iPSC cells differentiated for 20 days to cardiac myocytes.

   December 18th, 2024 at 10:50pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: CTCF protein

5 Processed Files

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESOO55WGR
Multiple Experiments
File
4DNFIGP8FGAG
peaks (bigbed)
2.52 MB
File
4DNFI2KOMG2S
conservative peaks (bigbed)
2.52 MB
File
4DNFI6X18XEP
signal fold change (bw)
3.89 GB
Experiment
4DNEXUBDBMSR
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
4DNFIZ2Y62WR
read positions (bed)
1.47 GB
Experiment
4DNEXLQUQYVO
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
4DNFIIIHS31E
read positions (bed)
624.9 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXUBDBMSR
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIZ2Y62WR
0.9
0.9
90.48m
Experiment
4DNEXLQUQYVO
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIIIHS31E
0.57
0.59
37.4m