ExperimentSetReplicate

ExperimentSet4DNESOL9JVE2
released

Replicates of Hi-C on CyT49 cells differentiated to gut tube endoderm

   February 27th, 2020 at 10:05pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
CyT49 differentiated to endoderm of foregut
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESOL9JVE2
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI63M3S1S
2.43 billion
56.469%
17.662%
25.869%
File
Contact List-replicate (pairs)
4DNFIZ1BMAHE
1.64 billion
56.076%
17.831%
26.093%
File
Contact List-replicate (pairs)
4DNFIZUV87TW
791.01m
57.283%
17.312%
25.405%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIB4MAPIN
2.94 billion
6.934%
9.866%
22.315%
5.065%
0.099%
File
Alignments (bam)
4DNFIUILKURS
1.57 billion
9.701%
9.947%
24.52%
5.4%
0.082%