ExperimentSetReplicate

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ExperimentSet4DNESOI2ALTL
released
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Replicates of RNA-seq on CRISPR/cas9-modified Patski cells (Del-Dxz4)

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

4 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXQDDUUS2
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFI4H65W1O
read positions (bam)
7.14 GB
File
4DNFIT2IA8YF
read counts (bw)
200.48 MB
File
4DNFIFBQKLYN
gene expression (tsv)
11.58 MB
File
4DNFIHP496CF
isoform expression (tsv)
23.63 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXQDDUUS2
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFI4H65W1O
133.14m
112.52m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXQDDUUS2
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIFBQKLYN
109.89m
33.38k