ExperimentSet4DNESOGBAIC7
released
May 31st, 2023 at 3:11pm
Data Usage Guidelines
Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.
Assay Description
Experiment Set Properties
Set Type
Replicate
Organism
Sample Type
in vitro differentiated cells
Experiment Type(s)
Modification Type
None
Treatment Type
None
Assay Details
Enzyme: Arima - A1, A2
10 Processed Files
Quality Metrics
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXMHLGGWC
Bio Rep 1, Tec Rep 1
in situ Hi-C on PDX1-eGFP dCAS9-KRAB H1 differentiated to endoderm of foregut with Arima - A1, A2Experiment
4DNEXUDU96VW
Bio Rep 2, Tec Rep 1
in situ Hi-C on PDX1-eGFP dCAS9-KRAB H1 differentiated to endoderm of foregut with Arima - A1, A2Experiment
For File
Failed Balancing
Details
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXMHLGGWC
Bio Rep 1, Tec Rep 1
in situ Hi-C on PDX1-eGFP dCAS9-KRAB H1 differentiated to endoderm of foregut with Arima - A1, A2Experiment
4DNEXUDU96VW
Bio Rep 2, Tec Rep 1
in situ Hi-C on PDX1-eGFP dCAS9-KRAB H1 differentiated to endoderm of foregut with Arima - A1, A2