ExperimentSetReplicate

ExperimentSet4DNESOBRQ1WW
released

Small-scale in situ Hi-C on mouse MII oocytes

   January 10th, 2020 at 3:45pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
primary cell
Biosource 
oocyte
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESOBRQ1WW
Multiple Experiments
File
Contact List-combined (pairs)
4DNFILPO3IFY
66.63m
71.414%
25.49%
3.096%
Experiment
4DNEX8DFVJD3
Bio Rep 1, Tec Rep 1
in situ Hi-C on oocyte with MboI
File
Contact List-replicate (pairs)
4DNFIDTNRRK4
42.52m
74.08%
22.678%
3.242%
Experiment
4DNEXMP3DRO5
Bio Rep 2, Tec Rep 1
in situ Hi-C on oocyte with MboI
File
Contact List-replicate (pairs)
4DNFI49UWUGG
24.12m
66.715%
30.446%
2.839%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX8DFVJD3
Bio Rep 1, Tec Rep 1
in situ Hi-C on oocyte with MboI
File
Alignments (bam)
4DNFIN2I9MPO
184.81m
10.214%
10.823%
40.021%
15.938%
0.49%
Experiment
4DNEXMP3DRO5
Bio Rep 2, Tec Rep 1
in situ Hi-C on oocyte with MboI
File
Alignments (bam)
4DNFIVG6J6AT
282.35m
12.588%
7.525%
45.37%
25.975%
0.123%