ExperimentSetReplicate

ExperimentSet4DNESO1O58ZA
released
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RNA-seq on wild-type GFP+ Foxp3 Treg cells isolated from thymus

   July 21st, 2023 at 8:55pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - thymus - Fox3p-GFP+
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXJSCAWVG
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - thymus - Fox3p-GFP+
File
Read Positions (bam)
4DNFIFDYTYSS
6.93m
6.45m
Experiment
4DNEXLA1W8YC
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - thymus - Fox3p-GFP+
File
Read Positions (bam)
4DNFIBGSMDJ2
5.03m
4.67m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXJSCAWVG
Bio Rep 1, Tec Rep 1
RNA-seq on Treg - thymus - Fox3p-GFP+
File
Gene Expression (tsv)
4DNFIYXAHSEJ
7.36m
8.04k
Experiment
4DNEXLA1W8YC
Bio Rep 2, Tec Rep 1
RNA-seq on Treg - thymus - Fox3p-GFP+
File
Gene Expression (tsv)
4DNFI1MYJ4MU
5.11m
4.67k