ExperimentSetReplicate

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ExperimentSet4DNESNYUNZVF
released
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Hi-C in HCT116, treated with via auxin-inducible degron system-6h

   August 16th, 2024 at 6:52pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: AluI

6 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESNYUNZVF
Multiple Experiments
File
4DNFINJ5915I
contact list-combined (pairs)
1.8 GB
File
4DNFI35AE3O3
contact matrix (hic)
923.6 MB
File
4DNFIQF4HNZ2
contact matrix (mcool)
563.49 MB
File
4DNFI8BTHP7Z
compartments (bw)
206.89 kB
Experiment
4DNEXCOOFV14
Bio Rep 1, Tec Rep 1
in situ Hi-C on HCT116 (Tier 2) with AluI
File
4DNFILHYWT1T
alignments (bam)
49.26 GB
File
4DNFIN5KA4SV
contact list-replicate (pairs)
1.93 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESNYUNZVF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINJ5915I
146.58m
18.53%
75.125%
6.345%
Experiment
4DNEXCOOFV14
Bio Rep 1, Tec Rep 1
in situ Hi-C on HCT116 (Tier 2) with AluI
File
Contact List-replicate (pairs)
4DNFIN5KA4SV
154.67m
18.766%
74.454%
6.78%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNYUNZVF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQF4HNZ2
None