ExperimentSetReplicate

ExperimentSet4DNESNYUNZVF
released
View JSON

Hi-C in HCT116, treated with via auxin-inducible degron system-6h

   August 16th, 2024 at 6:52pm
Source Publication
Multifaceted roles of cohesin in regulating transcriptional loops.
Kim M, Wang P, et al., bioRxiv : the preprint server for biology 2024

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: AluI

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESNYUNZVF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFINJ5915I
146.58m
18.53%
75.125%
6.345%
Experiment
4DNEXCOOFV14
Bio Rep 1, Tec Rep 1
in situ Hi-C on HCT116 (Tier 2) with AluI
File
Contact List-replicate (pairs)
4DNFIN5KA4SV
154.67m
18.766%
74.454%
6.78%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNYUNZVF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIQF4HNZ2
None