ExperimentSetReplicate

ExperimentSet4DNESNYBDSLY
released
View JSON

HiC from mature olfactory sensory neurons expressing Olfr17

   March 19th, 2018 at 8:04pm
Source Publication
LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice.
Monahan K, Horta A, et al., Nature 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
olfactory receptor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESNYBDSLY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIB5G24G6
1.2 billion
42.526%
21.199%
36.275%
Experiment
4DNEXDSNPZOU
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFICY5CI8Q
653.14m
43.981%
20.217%
35.802%
Experiment
4DNEXH1YN2XB
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Contact List-replicate (pairs)
4DNFIEIEFZMD
549.09m
40.794%
22.367%
36.838%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNYBDSLY
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI3M6726I
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXDSNPZOU
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIK5VKE7Y
1.64 billion
8.234%
12.905%
15.092%
23.829%
0.075%
Experiment
4DNEXH1YN2XB
Bio Rep 2, Tec Rep 1
in situ Hi-C on olfactory receptor cell with DpnII
File
Alignments (bam)
4DNFIW6J2M1A
1.3 billion
7.59%
10.772%
14.58%
24.729%
0.082%