ExperimentSetReplicate

ExperimentSet4DNESNYALVVY
released
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Multiplexed FISH in tdTomato-expressing (red) homozygous WT (Trp53 +/+) adenoma cells from K-MADM-Trp53 mouse

   May 27th, 2025 at 5:42pm
Source Publication
Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery.
Liu M, Jin S, et al., bioRxiv : the preprint server for biology 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Adenoma from mouse SA3961 and Adenoma from mouse SA3506 and Adenoma from mouse SA3441 and Adenoma from mouse SA3962
Experiment Type(s) 
multiplexed FISH
Modification Type 
Viral Transduction
Treatment Type 
None
Assay Details 
Target: Chromosomes, Total 473 TADs spanning between Chr1-Chr19 (mouse)
Channel
Imaging Rounds
Path
 
ch00
0
Yellow-green fiducial beads for drift correction
ch01
0
Chromosomes targeted by DAPI
ch02
1-50
~60kb feature-containing or central region of each of 473 TADs spanning from Chr1 to Ch19 targeted by Alexa 647-labelled imaging oligos
ch03
1-50
~60kb feature-containing or central region of each of 473 TADs spanning from Chr1 to Ch19 targeted by ATTO 565-labelled imaging oligos

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXKPXSCHD
Bio Rep 1, Tec Rep 1
multiplexed FISH on Adenoma from mouse SA3961 and Adenoma from mouse SA3506 and Adenoma from mouse SA3441 and Adenoma from mouse SA3962
File
4DNFI9PYHEEB
FOF-CT - DNA-spot/trace core (csv)
4.43 MB