ExperimentSetReplicate

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ExperimentSet4DNESNWS32Z2
released
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Replicates of H3K4me1 ChIP-seq experiments on H1-hESC (Tier 1) cells

   August 20th, 2021 at 4:40pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
stem cells
Sample 
H1-hESC (Tier 1)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K4me1

5 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESNWS32Z2
Multiple Experiments
File
4DNFIBAY3HHY
peaks (bigbed)
7.29 MB
File
4DNFIQ4H1BJP
conservative peaks (bigbed)
6.34 MB
File
4DNFIDPEPJ5B
signal fold change (bw)
1005.23 MB
Experiment
4DNEX5NOYD4H
Bio Rep 1, Tec Rep 1
ChIP-seq against H3K4me1 on H1-hESC (Tier 1)
File
4DNFIBAA5172
read positions (bed)
327.82 MB
Experiment
4DNEX54NGHVD
Bio Rep 2, Tec Rep 1
ChIP-seq against H3K4me1 on H1-hESC (Tier 1)
File
4DNFIT76S7DU
read positions (bed)
391.3 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEX5NOYD4H
Bio Rep 1, Tec Rep 1
ChIP-seq against H3K4me1 on H1-hESC (Tier 1)
File
Read Positions (bed)
4DNFIBAA5172
0.79
0.8
19.69m
Experiment
4DNEX54NGHVD
Bio Rep 2, Tec Rep 1
ChIP-seq against H3K4me1 on H1-hESC (Tier 1)
File
Read Positions (bed)
4DNFIT76S7DU
0.9
0.9
23.57m