ExperimentSetReplicate

ExperimentSet4DNESNSTBMBY
released

Replicates of in situ Hi-C on untreated HCT116 WAPL-mAID2 cells

   October 30th, 2021 at 1:35am
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: Arima - A1, A2

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESNSTBMBY
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIIBWRXMP
366.31m
61.397%
20.379%
18.224%
File
Contact List-replicate (pairs)
4DNFIKWG53DQ
204.43m
60.704%
20.542%
18.755%
File
Contact List-replicate (pairs)
4DNFI3ZLYLK8
161.88m
62.272%
20.173%
17.555%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNSTBMBY
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIYKBWW4V
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIFVI5GB4
416.37m
21.87%
21.583%
7.448%
0.0%
0.145%
File
Alignments (bam)
4DNFIKE3VGTU
320.41m
21.961%
21.696%
5.821%
0.0%
0.13%