ExperimentSetReplicate

ExperimentSet4DNESNRK4ZL7
released
View JSON

in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 4 days to ventricular cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESNRK4ZL7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIHJ83OV1
752.76m
40.923%
41.484%
17.593%
Experiment
4DNEXJ2X4338
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFI5CD24ZO
806.99m
40.904%
40.758%
18.338%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNRK4ZL7
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIM3UJ1XI
None