ExperimentSetReplicate

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ExperimentSet4DNESNRK4ZL7
released
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in situ Hi-C on wild-type WTC-11 iPSC cells differentiated for 4 days to ventricular cardiac myocytes.

   December 18th, 2024 at 5:04pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiogenic mesoderm
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DdeI and DpnII

8 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESNRK4ZL7
Multiple Experiments
File
4DNFIHJ83OV1
contact list-combined (pairs)
12.91 GB
File
4DNFI7C5YXNX
contact matrix (hic)
4.53 GB
File
4DNFIM3UJ1XI
contact matrix (mcool)
3.01 GB
File
4DNFI849TBED
compartments (bw)
203.45 kB
File
4DNFIV7472OB
boundaries (bed)
171.93 kB
File
4DNFI573DTCZ
insulation score-diamond (bw)
7.95 MB
Experiment
4DNEXJ2X4338
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
4DNFI83P4MVW
alignments (bam)
244.87 GB
File
4DNFI5CD24ZO
contact list-replicate (pairs)
13.97 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESNRK4ZL7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIHJ83OV1
752.76m
40.923%
41.484%
17.593%
Experiment
4DNEXJ2X4338
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiogenic mesoderm with DdeI and DpnII
File
Contact List-replicate (pairs)
4DNFI5CD24ZO
806.99m
40.904%
40.758%
18.338%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESNRK4ZL7
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIM3UJ1XI
None