ExperimentSetReplicate

ExperimentSet4DNESNN6K5M1
released
View JSON

DNA Paint on HFF Htert cells with 3 loci

   August 3rd, 2018 at 1:11pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:4:55053142-55196692 region, GRCh38:4:55236649-55437873 region, GRCh38:4:54794388-54995522 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:4:55053142-55196692 region targeted by Alexa Fluor 568-labeled BAC
ch02
GRCh38:4:55236649-55437873 region targeted by Alexa Fluor 488-labeled BAC
ch03
GRCh38:4:54794388-54995522 region targeted by Cy5-labeled BAC

4 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESNN6K5M1
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXT77NWMS
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFICNQ6YLB
loci distances (txt)
45.67 kB
Experiment
4DNEX117FZJ8
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIY5SQ5AQ
loci distances (txt)
55.68 kB
Experiment
4DNEXWJXOVSP
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFI2OWOGKF
loci distances (txt)
64.55 kB