ExperimentSetReplicate

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ExperimentSet4DNESNHVPQ5M
released
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53BP1 ChIPseq on HEK293 cells - time 3h after Cas9-AluTA mgRNA delivery

   February 14th, 2022 at 3:03am
Source Publication
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
Zou RS, Marin-Gonzalez A, et al., Nature cell biology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HEK293 (Tier 2)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Transient Transfection
Assay Details 
Target: TP53BP1 protein

4 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
From Multiple Experiments
4DNESNHVPQ5M
Multiple Experiments
File
4DNFIGSOQY6C
peaks (bigbed)
42.61 kB
File
4DNFIFFYJ59O
conservative peaks (bigbed)
42.61 kB
File
4DNFISFSR1DQ
signal fold change (bw)
277.67 MB
Experiment
4DNEX2F231QW
Bio Rep 1, Tec Rep 1
ChIP-seq against TP53BP1 protein on HEK293 (Tier 2)
File
4DNFIYFXJAHO
read positions (bed)
138.6 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEX2F231QW
Bio Rep 1, Tec Rep 1
ChIP-seq against TP53BP1 protein on HEK293 (Tier 2)
File
Read Positions (bed)
4DNFIYFXJAHO
0.73
0.74
8.36m