ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESNCMZ6EY
released
View JSON

Replicates of RNA-seq on CRISPR/cas9-modified Patski cells (Del-hinge clone a) with mock treatment 1

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

8 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Experiment
4DNEXDJCOR84
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFIUERIIBL
read positions (bam)
8.12 GB
File
4DNFIOQLTZ7O
read counts (bw)
235.15 MB
File
4DNFI4D5AZDM
gene expression (tsv)
11.58 MB
File
4DNFI1KFELUF
isoform expression (tsv)
23.63 MB
Experiment
4DNEX75EMIXX
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
4DNFI5DL3Y8K
read positions (bam)
7.72 GB
File
4DNFI783RWLK
read counts (bw)
182.33 MB
File
4DNFI2ZLYU38
gene expression (tsv)
11.58 MB
File
4DNFI9O9OET7
isoform expression (tsv)
23.62 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXDJCOR84
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIUERIIBL
126.21m
110.17m
Experiment
4DNEX75EMIXX
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFI5DL3Y8K
119.17m
104.35m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXDJCOR84
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFI4D5AZDM
98.11m
122.48k
Experiment
4DNEX75EMIXX
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFI2ZLYU38
94.03m
100.09k