ExperimentSetReplicate

ExperimentSet4DNESN7RP1VC
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Multiplexed FISH fine-scale in GFP+ expressing (green) homozygous mutant (Trp53 -/-) LUAD cells from K-MADM-Trp53 mouse

   May 27th, 2025 at 5:42pm
Source Publication
Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery.
Liu M, Jin S, et al., bioRxiv : the preprint server for biology 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
LUAD from mouse MM2030 (fine-scale)
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, mouse region
Channel
Imaging Rounds
Path
 
ch00
0
Yellow-green fiducial beads for drift correction
ch01
0
Chromosomes targeted by DAPI
ch02
1-50
40 consecutive 5-kb to 20-kb loc in each of the 10 genes targeted by Alexa fluor 647 imaging oligos
ch03
1-50
40 consecutive 5-kb to 20-kb loci in each of the 10 genes targeted by Atto 560 imaging oligos
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1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXX8COEGF
Bio Rep 1, Tec Rep 1
multiplexed FISH on LUAD from mouse MM2030 (fine-scale)
File
4DNFI75QYDB6
FOF-CT - DNA-spot/trace core (csv)
538.58 MB