ExperimentSetReplicate

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ExperimentSet4DNESN7FCYAV
released
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Replicates of RNA-seq on CRISPR/cas9-modified Patski cells (Del-hinge clone a) with 4uM 5-aza treatment

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
Chemical
Assay Details 
None

8 Processed Files

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Experiment
File
File Type
File Size
Experiment
4DNEXD1EHEPC
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFIOJLET29
read positions (bam)
7.88 GB
File
4DNFIUSW1E36
read counts (bw)
192.66 MB
File
4DNFIH4G78HM
gene expression (tsv)
11.58 MB
File
4DNFIQ4DL4NJ
isoform expression (tsv)
23.61 MB
Experiment
4DNEX7487ISN
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
4DNFIL1AUBT1
read positions (bam)
7.4 GB
File
4DNFI4R48XJQ
read counts (bw)
191.24 MB
File
4DNFISU6ZX8Q
gene expression (tsv)
11.57 MB
File
4DNFI2EMIWK1
isoform expression (tsv)
23.6 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXD1EHEPC
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIOJLET29
122.65m
107.91m
Experiment
4DNEX7487ISN
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIL1AUBT1
114.37m
100.93m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXD1EHEPC
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIH4G78HM
96.94m
46.58k
Experiment
4DNEX7487ISN
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFISU6ZX8Q
89.91m
68.34k