ExperimentSetReplicate

ExperimentSet4DNESN6MOYRF
released
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Hi-C on Mature Treg cells isolated from spleen

   May 2nd, 2023 at 9:14pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - spleen - Foxp3+
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESN6MOYRF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI1OJWX4C
382.5m
61.837%
13.829%
24.334%
Experiment
4DNEXSSSMTA4
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - spleen - Foxp3+ with MboI
File
Contact List-replicate (pairs)
4DNFIBBJ9TWP
172.79m
62.124%
14.36%
23.516%
Experiment
4DNEXTR78JAB
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - spleen - Foxp3+ with MboI
File
Contact List-replicate (pairs)
4DNFIMTSG4S2
209.71m
61.601%
13.392%
25.008%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESN6MOYRF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIPLATT8F
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXSSSMTA4
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - spleen - Foxp3+ with MboI
File
Alignments (bam)
4DNFI7JSRRDZ
250.38m
4.948%
10.655%
6.79%
8.593%
0.138%
Experiment
4DNEXTR78JAB
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - spleen - Foxp3+ with MboI
File
Alignments (bam)
4DNFIASF37NJ
308.15m
5.172%
10.537%
7.362%
8.874%
0.14%