ExperimentSetReplicate

ExperimentSet4DNESMXBLGKA
released

Small-scale in situ Hi-C on mouse ES cells

   January 10th, 2020 at 3:45pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
R1 mESC line
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESMXBLGKA
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI7SEMSOQ
145.22m
63.351%
21.507%
15.143%
Experiment
4DNEXK35JIU6
Bio Rep 1, Tec Rep 1
in situ Hi-C on R1 mESC line with MboI
File
Contact List-replicate (pairs)
4DNFIFB4DI6H
85.78m
62.252%
22.537%
15.211%
Experiment
4DNEX82F5GJ7
Bio Rep 2, Tec Rep 1
in situ Hi-C on R1 mESC line with MboI
File
Contact List-replicate (pairs)
4DNFIXPP27OM
59.44m
64.936%
20.019%
15.044%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXK35JIU6
Bio Rep 1, Tec Rep 1
in situ Hi-C on R1 mESC line with MboI
File
Alignments (bam)
4DNFITTKZVQQ
217.64m
9.491%
8.606%
20.871%
21.618%
0.059%
Experiment
4DNEX82F5GJ7
Bio Rep 2, Tec Rep 1
in situ Hi-C on R1 mESC line with MboI
File
Alignments (bam)
4DNFIX265JZX
161.11m
10.094%
8.248%
24.126%
20.636%
0.053%