ExperimentSetReplicate

ExperimentSet4DNESMU2MA2G
released

Replicates of Hi-C on H9 hESC cells , containing a MYL2-H2B-GFP marker for cardiocytes, at day 7 differentiation - cardiac progenitor cell.

   August 7th, 2019 at 5:53pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiac muscle myoblast
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESMU2MA2G
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFKTOWQL
2.32 billion
55.232%
18.136%
26.633%
File
Contact List-replicate (pairs)
4DNFIMF8MCIC
1.16 billion
52.824%
17.828%
29.348%
File
Contact List-replicate (pairs)
4DNFIAWN1IXC
1.15 billion
57.655%
18.446%
23.9%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFIZ5PUTL4
1.88 billion
8.207%
11.632%
13.226%
5.065%
0.1%
File
Alignments (bam)
4DNFI62NONMM
1.86 billion
8.051%
11.461%
13.404%
4.872%
0.098%