ExperimentSetReplicate

ExperimentSet4DNESMN7RCSB
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Chromatin tracing (ORCA) of a 3-Mb region at the chr6 locus in mESC RAD21-AID + auxin

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with Rad21-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXBE3W8U4
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFICN9NE8U
FOF-CT - DNA-spot/trace core (csv)
9.38 MB
File
4DNFIYAV18GS
FOF-CT - spot quality (csv)
2.67 MB
File
4DNFI84T87W2
FOF-CT - trace data (csv)
40.58 kB
Experiment
4DNEX7CIGDY1
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFIBI4PIOM
FOF-CT - DNA-spot/trace core (csv)
5.98 MB
File
4DNFIYK9HESW
FOF-CT - spot quality (csv)
1.7 MB
File
4DNFIEXZWFXA
FOF-CT - trace data (csv)
28.4 kB
Experiment
4DNEXG89XWJ8
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with Rad21-AID
File
4DNFI4AKVCVH
FOF-CT - DNA-spot/trace core (csv)
10.14 MB
File
4DNFIWQDIWYS
FOF-CT - spot quality (csv)
2.8 MB
File
4DNFI6B6G9YT
FOF-CT - trace data (csv)
58.82 kB
File
4DNFI3CFB15G
FOF-CT - cell data (csv)
83.7 kB