ExperimentSetReplicate

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ExperimentSet4DNESMDL47AN
released
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Replicates of RNA-seq on wild-type Patski cells with 4uM 5-aza treatment

   February 6th, 2018 at 9:57pm
Source Publication
Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.
Bonora G, Deng X, et al., Nature communications 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
Patski
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
None

8 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Experiment
4DNEXZQAZPNZ
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
4DNFIHE8Q4OD
read positions (bam)
9.13 GB
File
4DNFI34KD8ZU
read counts (bw)
212.66 MB
File
4DNFIY71LNY6
gene expression (tsv)
11.58 MB
File
4DNFITIF91TB
isoform expression (tsv)
23.62 MB
Experiment
4DNEXG6LTVLI
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
4DNFIR78384Z
read positions (bam)
8.69 GB
File
4DNFIKATMGRQ
read counts (bw)
211.58 MB
File
4DNFIIDI78P3
gene expression (tsv)
11.58 MB
File
4DNFI43231W8
isoform expression (tsv)
23.61 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXZQAZPNZ
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIHE8Q4OD
136.04m
116.03m
Experiment
4DNEXG6LTVLI
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Read Positions (bam)
4DNFIR78384Z
129.3m
110.99m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXZQAZPNZ
Bio Rep 1, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIY71LNY6
104.71m
70.57k
Experiment
4DNEXG6LTVLI
Bio Rep 2, Tec Rep 1
RNA-seq on Patski
File
Gene Expression (tsv)
4DNFIIDI78P3
99.38m
58.17k