ExperimentSetReplicate

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ExperimentSet4DNESM6WTYV3
released
View JSON

CTCF input on heterozygous Crispr modified TBX5 with 2 bp insertion causing frameshift WTC-11 iPSC cells differentiated for 20 days to artrial cardiac myocytes.

   December 19th, 2024 at 8:23pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: None (Control)

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEX5X51WPI
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIN6CCVTB
read positions (bed)
1.33 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEX5X51WPI
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIN6CCVTB
0.92
0.92
81.36m