ExperimentSetReplicate

ExperimentSet4DNESM2TG6OQ
released
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Biological replicates of SMC1 ChIP-seq on Scid.adh cells (empty vector)

   October 13th, 2022 at 3:38pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
scid.adh
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Smc1a (mouse)

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXBD8FBBC
Bio Rep 1, Tec Rep 1
ChIP-seq against Smc1a (mouse) on scid.adh
File
Read Positions (bed)
4DNFI61VWHX2
0.99
0.98
26.35m
Experiment
4DNEXLNARB5A
Bio Rep 2, Tec Rep 1
ChIP-seq against Smc1a (mouse) on scid.adh
File
Read Positions (bed)
4DNFIQZ114IM
0.98
0.97
24.26m