ExperimentSetReplicate

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ExperimentSet4DNESLUOPZZR
released

in situ Hi-C on bone marrow mononuclear lymphocytes of MCG020

   October 24th, 2024 at 10:15pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
primary cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

6 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESLUOPZZR
Multiple Experiments
contact list-combined (pairs)
869.65 MB
contact matrix (hic)
934.34 MB
contact matrix (mcool)
554.11 MB
compartments (bw)
205.84 kB
Experiment
4DNEXU35JBL8
Bio Rep 1, Tec Rep 1
in situ Hi-C on MCG020 Monocytes of bone marrow with MboI
alignments (bam)
10.92 GB
contact list-replicate (pairs)
1.03 GB

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESLUOPZZR
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIRV5MZMD
46.74m
59.215%
18.932%
21.852%
Experiment
4DNEXU35JBL8
Bio Rep 1, Tec Rep 1
in situ Hi-C on MCG020 Monocytes of bone marrow with MboI
File
Contact List-replicate (pairs)
4DNFIIML77OK
55.47m
58.439%
18.394%
23.167%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESLUOPZZR
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIF7H6DSM
None