ExperimentSetReplicate

ExperimentSet4DNESLUJ3INP
released
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TCC on TAM treated control hepatocytes (no Cre)

   May 10th, 2018 at 6:37pm
Source Publication
Two independent modes of chromatin organization revealed by cohesin removal.
Schwarzer W, Abdennur N, et al., Nature 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
hepatocyte
Experiment Type(s) 
TCC
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: HindIII

7 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESLUJ3INP
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI6ZBEODU
123.62m
37.264%
46.715%
16.021%
Experiment
4DNEXGWOOI8I
Bio Rep 1, Tec Rep 1
TCC on hepatocyte with HindIII
File
Contact List-replicate (pairs)
4DNFIZLIE6PG
51.08m
20.187%
71.328%
8.485%
Experiment
4DNEX1Y5NYNB
Bio Rep 2, Tec Rep 1
TCC on hepatocyte with HindIII
File
Contact List-replicate (pairs)
4DNFIU7JQQZ1
72.54m
49.289%
29.384%
21.327%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESLUJ3INP
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIAOYIWTK
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXGWOOI8I
Bio Rep 1, Tec Rep 1
TCC on hepatocyte with HindIII
File
Alignments (bam)
4DNFIB6YAL6D
94.03m
10.531%
25.461%
9.3%
0.389%
0.111%
Experiment
4DNEX1Y5NYNB
Bio Rep 2, Tec Rep 1
TCC on hepatocyte with HindIII
File
Alignments (bam)
4DNFI5U63V7I
134.05m
20.604%
17.318%
7.257%
0.705%
0.101%