ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESLT6BCNX
released
View JSON

Input control for RAD21 ChIP-seq on 4 hr dTAG treated dTAG-NIPBL clone D7

   October 18th, 2024 at 1:48pm
Source Publication
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay TM, Pant A, et al., bioRxiv 2024

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
dTAG-NIPBL hTERT-RPE-1 - clone D7
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: None (Control)

1 Processed File

Experiment
File
File Type
File Size
Experiment
4DNEXRKPADIW
Bio Rep 1, Tec Rep 1
ChIP-seq on dTAG-NIPBL hTERT-RPE-1 - clone D7
File
4DNFIIQCP7CM
read positions (bed)
451.89 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXRKPADIW
Bio Rep 1, Tec Rep 1
ChIP-seq on dTAG-NIPBL hTERT-RPE-1 - clone D7
File
Read Positions (bed)
4DNFIIQCP7CM
0.83
0.8
27.11m