ExperimentSetReplicate

ExperimentSet4DNESLM6T5VF
released
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in situ Hi-C on cerebellar granule neurons with etv1 sgRNA isolated using FANS at day 14 after in vivo electroporation from dCas9-KRAB mouse postnatal day 20

   August 13th, 2025 at 3:35pm

Note: Superseding Item - 4DNESLM6T5VF  

This experiment set supersedes 4DNESRR9GN9U because new sequencing replicates were added.

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cerebellar granule neuron - 14 days old
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

13 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESLM6T5VF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPPSGBE7
448.7m
61.545%
11.714%
26.741%
Experiment
4DNEXSSKYWRI
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI5Y3PA7D
111.2m
61.679%
12.362%
25.96%
Experiment
4DNEXX5DBAD4
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIJEI5T27
107.58m
63.183%
12.27%
24.547%
Experiment
4DNEXRI98TGP
Bio Rep 3, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI2P91SXQ
101.43m
61.581%
11.47%
26.949%
Experiment
4DNEXU29P92F
Bio Rep 4, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI2J8QQMR
91.68m
60.514%
10.682%
28.803%
Experiment
4DNEXH3XC9D2
Bio Rep 5, Tec Rep 1
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI4JVB6OU
96.83m
60.559%
10.495%
28.946%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESLM6T5VF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIGWABQ16
100000; 250000; 500000