ExperimentSetReplicate

ExperimentSet4DNESLLHNU3Z
released
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RNA-seq on auxin induced degron knockdown of SON and SSRM2 in HCT116 cells

   July 23rd, 2025 at 9:12pm
Source Publication
Highly active chromosome regions preferentially associate with two perispeckle networks that partition the interchromatin space
Venkata NC, Kim J, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
Chemical
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXGXBT684
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIQ64AEYR
805.08m
748.68m
Experiment
4DNEXX7GZ7I9
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIFWQ6D9Z
318.27m
295.03m
Experiment
4DNEXEIQCA8C
Bio Rep 3, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Read Positions (bam)
4DNFIJX6VICJ
291.17m
269.24m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXGXBT684
Bio Rep 1, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIDTL9IXG
1.19 billion
176
Experiment
4DNEXX7GZ7I9
Bio Rep 2, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFIFYBVQRI
489.88m
670
Experiment
4DNEXEIQCA8C
Bio Rep 3, Tec Rep 1
RNA-seq on HCT116 (Tier 2)
File
Gene Expression (tsv)
4DNFILJMIPK1
447.98m
710