ExperimentSetReplicate

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ExperimentSet4DNESLIKKM2F
released
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Early fraction S-phase Repliseq on F123 ESC in 2i - all cells were grown in a single culture and split into 2 batches prior to BrdU labeling and FACs sorting

   July 26th, 2018 at 3:56pm
Source Publication
Allele-specific control of replication timing and genome organization during development.
Rivera-Mulia JC, Dimond A, et al., Genome research 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F123-CASTx129 (Tier 2)
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Fraction: early fraction of 2 fractions

4 Processed Files

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Experiment
File
File Type
File Size
Experiment
4DNEXW5RQ15L
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on F123-CASTx129 (Tier 2) S-phase early fraction
File
4DNFIQTBPBNW
alignments (bam)
1.18 GB
File
4DNFIBX82LLQ
normalized counts (bg)
3.2 MB
Experiment
4DNEXH2LQR64
Bio Rep 2, Tec Rep 1
2-stage Repli-seq on F123-CASTx129 (Tier 2) S-phase early fraction
File
4DNFI6X2EYOF
alignments (bam)
1.73 GB
File
4DNFIPRSGTX5
normalized counts (bg)
3.33 MB

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXW5RQ15L
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on F123-CASTx129 (Tier 2) S-phase early fraction
File
Alignments (bam)
4DNFIQTBPBNW
16.75m
0.0%
Experiment
4DNEXH2LQR64
Bio Rep 2, Tec Rep 1
2-stage Repli-seq on F123-CASTx129 (Tier 2) S-phase early fraction
File
Alignments (bam)
4DNFI6X2EYOF
25.43m
0.0%