ExperimentSetReplicate

ExperimentSet4DNESLC8TDK4
released
View JSON

Late fraction S-phase Repliseq on HCT116 Tier 2 cells - all cells were grown in a single culture and split into 2 batches prior to BrdU labeling and FACs sorting

   August 17th, 2017 at 4:08am

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
2-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Fraction: late fraction of 2 fractions

4 Processed Files

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEX6SUB7CY
Bio Rep 1, Tec Rep 1
2-stage Repli-seq on HCT116 (Tier 2) S-phase late fraction
File
Alignments (bam)
4DNFIA5J1HN7
13.64m
1.08%
Experiment
4DNEXAPQBU2M
Bio Rep 2, Tec Rep 1
2-stage Repli-seq on HCT116 (Tier 2) S-phase late fraction
File
Alignments (bam)
4DNFIH9EFTYP
10.92m
0.931%