ExperimentSetReplicate

ExperimentSet4DNESL9R2MOH
released

Ab validation replicates of CTCF ChIP-seq on GM12878 cells - Cell Signaling, 3418T

   November 14th, 2019 at 8:04pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
immortalized cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: CTCF protein

5 Processed Files

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX796ADAK
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on GM12878 (Tier 1)
File
Read Positions (bed)
4DNFI2PADTTE
0.96
0.96
28.96m
Experiment
4DNEX88IUHJR
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on GM12878 (Tier 1)
File
Read Positions (bed)
4DNFI1IP5NLL
0.94
0.94
32.62m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Report
Details
From Multiple Experiments
4DNESL9R2MOH
Multiple Experiments
File
Peaks (bigbed)
4DNFIX8K8F9K
82.73k
1.13
1.06
0.53