ExperimentSetReplicate

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ExperimentSet4DNESL9DYEJ7
released
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Ab validation replicates of H3K27ac ChIP-seq on GM12878 cells - Diagenode, C15200184-50

   November 14th, 2019 at 8:04pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
GM12878 (Tier 1)
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: H3K27ac

5 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
From Multiple Experiments
4DNESL9DYEJ7
Multiple Experiments
File
4DNFIHR8WV1E
peaks (bigbed)
3.1 MB
File
4DNFIX9H85V8
conservative peaks (bigbed)
3.1 MB
File
4DNFIDECXIJC
signal fold change (bw)
553.71 MB
Experiment
4DNEXLD1AIJM
Bio Rep 1, Tec Rep 1
ChIP-seq against H3K27ac on GM12878 (Tier 1)
File
4DNFICBKEV1O
read positions (bed)
133.79 MB
Experiment
4DNEX2AFMP4E
Bio Rep 2, Tec Rep 1
ChIP-seq against H3K27ac on GM12878 (Tier 1)
File
4DNFIC838H8P
read positions (bed)
167.59 MB

Quality Metrics

Experiment
For File
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Details
Experiment
4DNEXLD1AIJM
Bio Rep 1, Tec Rep 1
ChIP-seq against H3K27ac on GM12878 (Tier 1)
File
Read Positions (bed)
4DNFICBKEV1O
0.98
0.98
8.04m
Experiment
4DNEX2AFMP4E
Bio Rep 2, Tec Rep 1
ChIP-seq against H3K27ac on GM12878 (Tier 1)
File
Read Positions (bed)
4DNFIC838H8P
0.97
0.97
10.07m
Experiment
For File
Optimal Peaks
Rescue Ratio
Self Consistency Ratio
Fraction of Reads in Peaks
Details
From Multiple Experiments
4DNESL9DYEJ7
Multiple Experiments
File
Peaks (bigbed)
4DNFIHR8WV1E
65.62k
1.0
1.16
0.59