ExperimentSetReplicate

ExperimentSet4DNESL3FF6MP

released
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Chromatin tracing of SOX9 locus in wt H9 hESCs. 80 sequential steps spaced 50 kb (each spot is 5 kb), 4 Mb in total.

January 18th, 2023 at 9:25pm

Source Publication

Structural elements promote architectural stripe formation and facilitate ultra-long-range gene regulation at a human disease locus.

Chen LF, Long HK, et al., Molecular cell 2023

Note on FOF-CT file format

Experiment Set Properties

Replicate

stem cells

multiplexed FISH

None

None

Target: 80 spaced regions at SOX9 locus

ch00

1-80

80 spaced regions at SOX9 locus targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)

ch01

-

80 spaced regions at SOX9 locus targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

2 Processed Files

Supplementary Files

Provenance

Attribution

Details

Warnings

2 Processed Files

Experiment

File

File Type

File Size

Experiment

4DNEX9M1MGSI

Bio Rep 1, Tec Rep 1

multiplexed FISH on H9

File

FOF-CT - DNA-spot/trace core (csv)

5.12 MB

File

FOF-CT - spot quality (csv)

1.4 MB