ExperimentSetReplicate

ExperimentSet4DNESKWHLKDQ
released
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Chromatin tracing (ORCA) of HoxA locus in mouse brain at embryonic stage E10.5

   January 24th, 2023 at 12:49pm
Source Publication
Polycomb repression of Hox genes involves spatial feedback but not domain compaction or phase transition.
Murphy SE, Boettiger AN, Nature genetics 2024

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
brain
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: 52 consecutive 5-kb regions at HoxA locus (mouse)
Channel
Imaging Rounds
Path
 
ch00
1-52
52 consecutive 5-kb regions at HoxA locus (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)
ch01
1-52
52 consecutive 5-kb regions at HoxA locus (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXRZJPZMP
Bio Rep 1, Tec Rep 1
multiplexed FISH on brain
File
4DNFIKV75N54
FOF-CT - DNA-spot/trace core (csv)
33.11 MB
File
4DNFILIAI18J
FOF-CT - spot quality (csv)
56.78 MB
Experiment
4DNEXTUNW2F9
Bio Rep 2, Tec Rep 1
multiplexed FISH on brain
File
4DNFI7XAFWPA
FOF-CT - DNA-spot/trace core (csv)
37.27 MB
File
4DNFIYX2WYHN
FOF-CT - spot quality (csv)
63.56 MB