ExperimentSetReplicate

ExperimentSet4DNESKSPBI9A
released
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Replicates of RNA-seq on LMNA R225R homozygous clone 38 (corrected.2) hIPSCs differentiated into cardioymyocytes

   February 20th, 2019 at 3:42am
Source Publication
Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy.
Bertero A, Fields PA, et al., The Journal of cell biology 2019

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
induced pluripotent stem cells
Sample 
LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

15 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXY54PXIP
Bio Rep 1, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Read Positions (bam)
4DNFIEIJ2QYE
22.6m
19.34m
Experiment
4DNEXNIBV1WV
Bio Rep 2, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Read Positions (bam)
4DNFIA2EVUIU
25.36m
21.67m
Experiment
4DNEXEYTI1DF
Bio Rep 3, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Read Positions (bam)
4DNFIXA1CPA8
26.89m
22.06m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXY54PXIP
Bio Rep 1, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Gene Expression (tsv)
4DNFIZQX34SX
21.28m
116
Experiment
4DNEXNIBV1WV
Bio Rep 2, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Gene Expression (tsv)
4DNFISATHDNR
23.76m
148
Experiment
4DNEXEYTI1DF
Bio Rep 3, Tec Rep 1
RNA-seq on LMNA-R225X-het with LMNA-R225X corrected to wild-type by Crispr
File
Gene Expression (tsv)
4DNFIK2D34LV
24.5m
162