ExperimentSetReplicate

ExperimentSet4DNESKPSB8I2
released
View JSON

RNA-seq of untreated CTCF-AID mouse embryonic stem cells

   November 7th, 2018 at 9:13pm
Source Publication
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Nora EP, Goloborodko A, et al., Cell 2017

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXPE44G2D
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a with CTCF-AID
File
Read Positions (bam)
4DNFIAIM44FR
15.94m
13.22m
Experiment
4DNEXEIOUJSV
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a with CTCF-AID
File
Read Positions (bam)
4DNFI8XQWCQW
39.15m
32.55m
Experiment
4DNEXNMK29Y2
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a with CTCF-AID
File
Read Positions (bam)
4DNFIXVGLIPG
134.89m
110.36m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXPE44G2D
Bio Rep 1, Tec Rep 1
RNA-seq on ES-E14TG2a with CTCF-AID
File
Gene Expression (tsv)
4DNFIY4OCRUQ
22.63m
617.74k
Experiment
4DNEXEIOUJSV
Bio Rep 2, Tec Rep 1
RNA-seq on ES-E14TG2a with CTCF-AID
File
Gene Expression (tsv)
4DNFIJ6M1FMG
58.99m
327.18k
Experiment
4DNEXNMK29Y2
Bio Rep 3, Tec Rep 1
RNA-seq on ES-E14TG2a with CTCF-AID
File
Gene Expression (tsv)
4DNFIHPPLSJ9
191.99m
2.53m