ExperimentSetReplicate

ExperimentSet4DNESKJCPL3Y
released
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Hi-C on wild-type GFP+ Foxp3 Treg cells isolated from thymus

   May 2nd, 2023 at 9:14pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
Treg - thymus - Fox3p-GFP+
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESKJCPL3Y
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIEOCIS8Q
242.09m
59.056%
16.556%
24.388%
Experiment
4DNEXAFHOZ3Z
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - thymus - Fox3p-GFP+ with MboI
File
Contact List-replicate (pairs)
4DNFIR4TE61P
119.42m
59.182%
16.53%
24.287%
Experiment
4DNEXRZFOYRK
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - thymus - Fox3p-GFP+ with MboI
File
Contact List-replicate (pairs)
4DNFI21MTU29
122.68m
58.933%
16.581%
24.486%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESKJCPL3Y
Multiple Experiments
File
Contact Matrix (mcool)
4DNFITRMOPAM
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXAFHOZ3Z
Bio Rep 1, Tec Rep 1
in situ Hi-C on Treg - thymus - Fox3p-GFP+ with MboI
File
Alignments (bam)
4DNFIANSXTWG
194.25m
4.677%
10.727%
14.481%
8.641%
0.127%
Experiment
4DNEXRZFOYRK
Bio Rep 2, Tec Rep 1
in situ Hi-C on Treg - thymus - Fox3p-GFP+ with MboI
File
Alignments (bam)
4DNFIBPU71GX
205.25m
4.757%
10.683%
15.894%
8.897%
0.125%