ExperimentSetReplicate

ExperimentSet4DNESKJ92GBH
released

RNA-seq on cerebellum from CD1 mouse postnatal day 14

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEX1G2OM2T
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Read Positions (bam)
4DNFIVZA2G23
8.24m
7.38m
Experiment
4DNEXKE6MSY8
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Read Positions (bam)
4DNFI8PGR7W1
8.64m
7.73m
Experiment
4DNEXPVB79BK
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Read Positions (bam)
4DNFIYDEXBXE
7.19m
6.44m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEX1G2OM2T
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Gene Expression (tsv)
4DNFIZNS3LAD
8.64m
4.52k
Experiment
4DNEXKE6MSY8
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Gene Expression (tsv)
4DNFIWQW9QBB
9.37m
8.92k
Experiment
4DNEXPVB79BK
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellum - PND 14
File
Gene Expression (tsv)
4DNFIBEKN3C3
7.71m
3.95k