ExperimentSetReplicate

ExperimentSet4DNESKDTYL1N
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Biological replicates of CTCF ChIP-seq on TCF1 induced NIH-3T3 cells

   October 13th, 2022 at 3:38pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
NIH3T3
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
  1. Transient Transfection
  2. Chemical
Assay Details 
Target: Ctcf mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXYF3REMH
Bio Rep 1, Tec Rep 1
ChIP-seq against Ctcf mouse protein on NIH3T3
File
Read Positions (bed)
4DNFIYELKUN3
0.92
0.92
16.83m
Experiment
4DNEX9VT6GXZ
Bio Rep 2, Tec Rep 1
ChIP-seq against Ctcf mouse protein on NIH3T3
File
Read Positions (bed)
4DNFI8JEHEBU
0.92
0.92
16.04m